species:   Opsin
pid:       PID1871
parent:    n_os_milR_39
paralog:   
locus:     JAAVMX010000001.1:18042309-18042368
matures:   ['UAAUGGAUCUAUCCGGCUAGU', 'UAGCUACAUCAUAGAUUUAACAAC']
srr:       SRR12952899
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952899.cram JAAVMX010000001.1:18042309-18042368

63 out of bounds
149 alignments
39 proper strand
26 stranded perfect matches

**************************       ***********************    
CUUAGCUACAUCAUAGAUUUAACAACACAAUAACUUAAUGGAUCUAUCCGGCUAGUCACC
.((((((.....(((((((((.................)))))))))..)))))).....
-----------------------------------UAAUGGAUCUAUCCGGCUAGU---- l=21 a=15 c
--UAGCUACAUCAUAGAUUUAACAAC---------------------------------- l=24 a=0 c*
-----------------------------------UAAUGGAUCUAUCCGGCUAGU---- l=21 a=15 ma
--UAGCUACAUCAUAGAUUUAACAAC---------------------------------- l=24 a=0 ma*

------------------UUAACAACACAAUAACUUAAUGGAUC---------------- l=26 a=2 
---------------------------CAAUAACUUAAUGGAUCUAUCCGGCUAa----- l=28 a=1 
----------------------------------UUAAUGGAUCUAUCCGGCUAG----- l=21 a=2 
----------------------------------UUAAUGGAUCUAUCCGGCUAGc---- l=22 a=3 
----------------------------------UUAAUGGAUCUAUCCGGCUAGU---- l=22 a=6 
----------------------------------UUAAUGGAUCUAUCCGGCUAGg---- l=22 a=2 
-----------------------------------UAAUGGAUCUAUCCGGCc------- l=18 a=2 
-----------------------------------UAAUGGAUCUAUCCGGCUg------ l=19 a=1 
-----------------------------------UAAUGGAUCUAUCCGGCUAGU---- l=21 a=15 (c,ma)
-----------------------------------UAAUGGAUCUAUCCGGCUAGc---- l=21 a=3 
-----------------------------------UAAUGGAUCUAUCCGGCUAGa---- l=21 a=1 
-----------------------------------UAAUGGAUCUAUCCGGCUAGUC--- l=22 a=1 

mb-01010
ax-1001011
ku-01
ss-101110001100
fn-101
